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University of Colorado Cancer Center

University of Colorado Cancer Center, A National Cancer Institute-designated Comprehensive Cancer Center
 

Software


The Biostatistics and Bioinformatics Shared Resource offers access to various software programs to University of Colorado Cancer Center members. Current software available includes:

multiMiR

The R package multiMiR, with web server at http://multimir.ucdenver.edu, is a comprehensive collection of predicted and validated miRNA-target interactions and their associations with diseases and drugs. (Y. Ru, K. Kechris, B. Tabakoff, P. Hoffman, R. Radcliffe, R. Bowler, S. Rossi, G. Calin, L. Bemis, and D. Theodorescu (2014) The multiMiR R package: Integration of microRNA-target interactions along with their disease and drug associations [submitted]).

Oncomine

Oncomine Research Edition is a powerful web application that integrates and unifies high-throughput cancer profiling data so that target expression across a large volume of cancer types, subtypes and experiments can be assessed online, in seconds.
 
The program offers an initial login for free. University of Colorado Cancer Center members should register and work with the free version until they become familiar with the program. When members are ready to finalize their analyses, they can contact Ken Jones at kenneth.l.jones@ucdenver.edu and he will set them up with an upgraded login.
 
Members should understand that the University of Colorado Cancer Center only has two upgraded versions and that they are shared. All logins should be used and relinquished as quickly as possible.