Negacy Hailu | Lawrence Hunter | Investigation of traditional and deep neural sequence models for biomedical concept recognition. | 2019 | |
Rani Powers | James Costello | | 2019 | Senior Staff Scientist, Wyss Institute |
Michael Shaffer | Catherine Lozupone | Using networks to understand microbiome and metabolome interactions | 2019 | Postdoctoral Fellow, Colorado State University |
Kelsey (KC) Anderson | Sonia Leach | Prioritizing Candidate Genes in Disjoint Sets using Graph Kernels on Unverlying Protien-protien networks. | 2018 (Masters Degree) | |
Kyle Smith | Debashis Ghosh | Somatic Evolution in Cancer | 2017 | Bioinformatics Scientist at St. Jude Children's Research Hospital |
Gargi Datta | Sonia Leach & Michael Strong | Machine Learning and genomic analysis to predict drug resistance in mycobacterium tuberculosis | 2016 | Postdoctoral Fellow, University of Colorado-Boulder |
Charlotte Siska | Katerina Kechris | Determining Differentially Correlated Feature Pairs in High-Throughput Data | 2016 | Big Data Scientist, Arrow Electronics |
William Baumgartner | Lawrence Hunter | Enhancing ontology concept enrichment through deductive entailment | 2015 | Research Instructor, University of Colorado-Anschutz Medical Campus |
Christopher Funk | Lawrence Hunter | Recognition and Normalization of Terminology from Biodedical Ontologies and their Application for Pharmacogene and Protein Function Prediction | 2015 | Medical Informatics with Wolter Kluwer Health/Health Language in the Denver Tech Center |
David Knox | Robin Dowell | A simulation modeling framework to study transcriptional regulation through the dynamic changes in the configuration of DNA binding factors. | 2015 | Instructor, Department of Computer Science, University of Colorado-Boulder |
Megan Pirrung | Carsten Goerg | Effective Data Visualization for Communication and Analysis of Microbiome Data | 2015 | Visualization Scientist with the Visual Analytics Group for the Pacific Northwest National Laboratory in Richland, Washington |
Daniel Dvorkin | Katerina Kechris | Graphical model methods for integrating diverse sources of genome-scale data. | 2013 | Postdoctoral Fellowwith UCD-AMC Dr. Robert Roach Lab Department of Emergency Medicine |
Daniel McShan | Lawrence Hunter | Computational Bioalchemy, Optimal Pathway Search for the Analysis and Synthesis of Metabolic Systems | 2012 | Complex Systems Architect, Simulation and Test Expert for Syzygyx, Incorporated, BRYXco, CdK, Ltd. |
Ronald Schuyler | Lawrence Hunter | Multi-Marker Tests and Proxy Association for Functional Rare Variants | 2012 | Assistant Research Professor, Department of Immunology and Microbiology, University of Colorado-Anschutz Medical Campus |
Vijetha Vemulapalli | David Pollock | Delineating the Evolutionary Dynamics of Mutation and Selection | 2012 | Informatics Scientist, Berg Biosystems in Boston, MA |
Philip Ogren | Lawrence Hunter | Coordination Resolution in Biomedical Texts | 2010 | Software Developer for Oracle in Broomfield, Colorado |
Elizabeth (Betsy) Siewert | Katerina Kechris | Prediction of Transcription Factor Binding Sites Using Information From Multiple Species | 2010 | Statistical Consultant at Statistically Speaking |
J. Gregory Caporaso | Lawrence Hunter | Extracting signal from noise in biological data : evaluations and applications of text mining and sequence coevolution | 2009 | Assistant Professor of Biology, Assistant Director Center for Microbial Genetics and Genomics, Northern Arizona Univeristy |
Todd Gibson | Debra Goldberg | Modeling the Evolution of Protein Interaction networks | 2009 | Assistant Professor, California State University, Chico |
Hyun-Min Kim | David Pollock | Evolution and detection of transcription factors. Transcription and ChIP-chip assays. Analysis of hydrophobiicty profiles. | 2009 | Postdoctoral Fellow: University of Colorado- Pollock Lab |
Thomas McTavish | Lawrence Hunter | Modeling long-range synchrony in the olfactory bulb | 2009 | Senior Research Scientist at NCS Pearson, Denver Colorado |
Anis Karimpour-Fard | Lawrence Hunter | Prediction of protein-protein interactions and function in bacteria | 2008 | Research Associate: University of Colorado- Hunter Lab |
Zhiyong Lu | Lawrence Hunter | Text mining on GeneRIFs | 2007 | Assoc Investigator, Computational Biology Branch NCBI, NLM, NIH |
Min Hong | Lawrence Hunter | Implicit constraint enforcement to control the physically-based biomedical simulation | 2005 | Assistant Professor: Soon Chun Hyang University, Korea |
Steven Russell | Lawrence Hunter | Machine learning and in silico modeling for improved identification of peptides from shotgun proteomic MS/MS Spectra | 2005 | Consultant, KM at Siemens Corporate Research, Greater New York City Area |
Farzin Imani | Dennis Lezotte | Simulation of medical ultrasound images using linear systems theory | 2003 | Assoc. Professor U. of Pittsburg Medical Center |
Callie Federer | Joel Zylberberg | | | |
Nicolle Witte | Jim Costello | | | |