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Rui Zhao, Assistant Professor

Ph.D. (1996), Purdue University


 

 

 

Contact Info:

Molecular Biology
University of Colorado

Rui Zhao, Ph.D.  Research One North
RC1 South, Rm 9111B Rui.Zhao@ucdenver.edu Phone: 303-724-3269

My laboratory has two major research focuses. The first is to understand the molecular mechanism of pre-mRNA splicing using a combination of X-ray crystallography, molecular biology, biochemistry and yeast genetics approaches. Splicing of pre-mRNA is essential for gene expression in all eukaryotes. In higher eukaryotes such as mammals, an average of 95% of the nucleotides in the primary transcript (pre-mRNA) of a protein-encoding gene are introns. These introns need to be precisely removed by splicing before the mRNA can be transported out of the nucleus and translated. Even a single nucleotide error can cause catastrophic consequences. It has also become increasingly clear that alternative splicing is a fundamental approach for eukaryotic gene expression regulation. Aberrant splicing contributes to at least 15% of human genetic disorders and causes many other diseases such as cancer. A thorough understanding of the pre-mRNA splicing pathway may provide useful approaches for human disease therapy. The splicing of pre-mRNA is carried out through two transesterification reactions catalyzed by the spliceosome, a huge macromolecular complex that contains five RNAs and numerous (over 145 in human) protein splicing factors. Using a combination of structural biology, molecular biology, biochemistry, and yeast genetics approaches, our goal is to understand how introns are recognized, spliceosomes assembled, and splicing catalyzed and regulated.

Our second research area focuses on identifying inhibitors of the Six1/Eya transcriptional complex for anti-breast cancer drug design. Transcription factor Six1 and its co-activator Eya are important for the development of many organs. Six1 and Eya are typically down-regulated after organ development is complete but are abnormally over-expressed in over 50% of primary breast tumors and over 90% of metastatic lesions. The over-expression of Six1 and Eya has a causal relationship with the initiation and metastatic development of breast cancer. Our goal is to identify small molecule inhibitors of the Six1/Eya transcriptional complex using both high throughput screening and structure-based drug design approaches. Since Six1 and Eya are typically not needed in normal adult tissues, compounds targeting this complex may be effective anti-breast cancer therapeutics with limited side effects.

 

Guarnieri, M. T., B. S. J. Blagg, R. Zhao (in press). A high throughput TNP-ATP displacement assay for screening inhibitors of ATP-binding in bacterial histidine kinases. Assay and Drug Developement Technologies.

Pazy, Y., M. A. Motaleb, M. T. Guarnieri, N. W. Charon, R. Zhao, R. E. Silversmith (2010). Identical phosphatase mechanisms achieved through distinct modes of binding phosphoprotein substrate. PNAS. 107, 1924-1929.

Zhang, L., T. Xu, C. Maeder, L. Bud, J. Shanks, J. Nix, C. Guthrie, J.A. Pleiss, R. Zhao (2009). Structural evidence for consecutive Hel308-like modules in the spliceosomal ATPase Brr2. Nature Structure and Molecular Biology. 16, 731-739.

Patrick, A.N., B.J. Schiemann, K. Yang, R. Zhao*, and H. Ford* (2009). Biochemical and functional characterization of 6 Six1 Branchio-Oto-Renal Syndrome mutations. J. Biol. Chem. 284, 20781-20790. (* Co-corresponding authors)

Yang, K., L. Zhang, T. Xu, A. Heroux, R. Zhao (2008). Crystal structure of the beta-finger domain of Prp8 reveals analogy to ribosomal proteins. PNAS. 105, 13817-22.

Shen, H., X. Zheng, J. Shen, L. Zhang, R. Zhao, M. R. Green (2008). Distinct activities of the DExD/H-box splicing factor hUAP56 facilitate stepwise assembly of the spliceosome. Genes & Development. 22, 1796-1803.

Guarnieri, M., L. Zhang, J. Shen, R. Zhao (2008). The Hsp90 inhibitor radicicol interacts with the ATP-binding pocket of bacterial sensor kinase PhoQ. J. Mol. Biol. 379, 82-93.

Shen, J., L. Zhang, R. Zhao (2007). Biochemical characterization of the ATPase and helicase activity of UAP56, an essential pre-mRNA splicing factor and mRNA export factor. J. Biol. Chem. 282, 22544-22550.

Zhang, L., J. Shen, M. Guarnieri, A. Heroux., K. Yang, R. Zhao (2007). Crystal structure of the C-terminal domain of splicing factor Prp8 carrying retinitis pigmentosa mutants. Protein Science, 16, 1024-1031.

Pena, P. V., F. Davrazou, X. Shi, K. Walter, V. V. Verkhusha, O. Gozani, R. Zhao, and T. G. Kutateladze (2006). Molecular mechanism of H3K4Me3 recognition by Plant Homeodomain of Inhibitor of Growth 2 tumor suppressor. Nature, 442, 100-103.

Zhao, R.*, J. Shen, M. R. Green, M. MacMorris and T. Blumenthal (2004). Crystal structure of UAP56, a DExD/H-box protein involved in pre-mRNA splicing and mRNA export. Structure, 12, 1373-1381. (*. Corresponding author)